I am not sure what "middle click" is, it sounds like some third party utility, so until we know what you mean by this and what it is supposed to do, I can't really help on that front.
One thing I would say though is that there is a difference between a 3 finger tap, and a triple tap, Most people would mean a triple tap to mean tapping 3 times, in the same way as double click means clicking twice. For clarity, I am sure you mean a 3 finger tap (all three fingers in one go with one tap) - it's a minor point, but will help you to define the problem better.
If, after disabling the 3 finger tap lookup feature in Daniel Lawson's answer this stops the dictionary lookup, but doesn't then allow your MiddleClick utility to use it, then is might suggest that it is simply not compatible with Mountain Lion, and I would check with the developer for support.