I have a iMac 2008 with 2 drives. Main drive is an SSD in the DVD bay and second drive 3,5" HHD in the original iMac disk bay. After a reboot before which everything was working just fine second drive is inaccessible from OS but if I boot in recovery mode I can see also the second drive and also all the files in it. I run SMART and no issue appears in the disk.

I'm attaching some pictures (text is in Italian but the meaning should be very clear).

diskutil list from OSX

SOS disk aid from Recovery Mode

diskutil list from Recovery Mode

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