One example is some of Karabiner's executables, I get popups saying "You don't have permission to use the application "karabiner_grabber." as well as karabiner_console_user_server
and a few others. They all appear to be located in /Library/Application Support/org.pqrs/Karabiner-Elements/bin
.
If I select 'Always Allow' on the popup, it just comes up again within about 15 seconds.
The executables don't appear under the list in Preferences > Parental Controls > Apps > Limit Applications on this Mac > Allowed Apps
I can drag them in from Finder, but they disappear if I exit the preferences then go back in.