After upgrading to the newest El Capitan from 10.10. to 10.11.1 - I guess - the normally invisible EFI partition appears on the desktop as a regular volume on different machines, if I choose to show the volumes in the finder preferences.
When I start "First Aid" with Disk utility the EFI partition get ejected, but on the next start they will appear again. I can boot in Recovery Mode and El Capitan seems to work fine (as fine as it can).
But how can I get OS X not to autoload the EFI partition and hide it again?
Admins Mac Pro:~ admin$ diskutil info /Volumes/EFI
Device Identifier: disk0s1
Device Node: /dev/disk0s1
Whole: No
Part of Whole: disk0
Device / Media Name: EFI System Partition
Volume Name: EFI
Mounted: Yes
Mount Point: /Volumes/EFI
File System Personality: MS-DOS FAT32
Type (Bundle): msdos
Name (User Visible): MS-DOS (FAT32)
Partition Type: EFI
OS Can Be Installed: No
Media Type: Generic
Protocol: SATA
SMART Status: Verified
Volume UUID: 0E239BC6-F960-3107-89CF-1C97F78BB46B
Disk / Partition UUID: BF3A02F5-1B7F-4F5C-9E27-2C3378181F53
Total Size: 209.7 MB (209715200 Bytes) (exactly 409600 512-Byte-Units)
Volume Free Space: 181.5 MB (181542912 Bytes) (exactly 354576 512-Byte-Units)
Device Block Size: 512 Bytes
Allocation Block Size: 512 Bytes
Read-Only Media: No
Read-Only Volume: No
Device Location: Internal
Removable Media: No
Solid State: No