Love that Safari 9 has pinned tabs, it was the last piece that enabled me to switch from Chrome. However, I often close all tabs except the pinned tabs. However, unless I make one of the pinned tabs active and then close the other tabs it closes the whole window, pinned tabs and all.
For example, let's say I have one pinned tab and one not. If the unpinned tab is active and I hit command+w the whole window closes. But if I make the pinned tab active and then click the close button on the unpinned tab, the window stays open. Any way to keep the window open as long as there are any tabs open, pinned or otherwise?