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While my system was performing a $ brew update && brew upgrade we had a power failure and my iMac shut down while updating packages/dependancies.

After rebooting I tried to run $ brew update && brew upgrade again and encountered the following error:

fatal: unable to access 'https://github.com/mxcl/homebrew/': transfer closed with outstanding read data remaining

Error: Failure while executing: git pull -q origin refs/heads/master:refs/remotes/origin/master

$ brew doctor strangely returns a clean bill of health.

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Solved. The problem was running $ brew update && brew upgrade together.

It was causing some kind of Git formula conflict.

I ran $ brew update and then $ brew upgrade, formulae were updated and all is good.

Am now able to run both together again.

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