I recommend NValt, a fork of Notational Velocity:
http://brettterpstra.com/projects/nvalt/
It doesn't work in the menubar, but you can configure a shortcut to show/hide the NV window if you want. It's also got a built in search, kind of like spotlight, which you can use to open notes quickly.
Here's a screenshot:
By default it saves onlinethe files in a database, but you can also save the notes in a specified directory as plaintext, RTF or HTML files. Or you can synchronize it with Simplenote (but Dropbox will work just as well if you use files/db). Markdown support is not first class, but it works when you save as RTF or HTML.