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How do I run BeyondCompare in X11 as root?

I used WineBottler to install Beyond Compare on my Mac. It runs within an X11 environment. (It works great, by the way.) But it cannot access many folders to which my user account does not have ...
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X11 application from 'administrator' account

Call me paranoid but my everyday account has no privileges. I have a 'administrator' account who is in wheel. When I want to perform administrative tasks, I open a terminal and do su - administrator ...