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How to install certificates with Mono on Rootless El Capitan

As follow up question for this post: How do I install global certificates on a Rootless El Capitan for mono? Mono uses the path /usr/share/.mono/certs, which isn't allowed anymore (see refered post)....
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A lot of problems with Homebrew

This is probably bad form for this board, and feel free to delete it if it is, but running brew doctor reveals the following: Warning: /usr/local/lib/pkgconfig isn't writable. This can happen if you "...