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I have an early 2011 Macbook Pro with Lion. I used Ukelele and KeyRemap4Macbook to customize my keyboard layout, because I wasn't satisfied with the default one.

Namely I switched right Cmd with right Option, Fn with left Ctrl and changed Eject to forward Delete.

Everything works as expected except two apps - Xcode and Textmate. When I work with these, my left Cmd and Option keys are also switched, which was not intended.

Any idea how to get this fixed?

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Isn't the issue with the modifier keys specific to KeyRemap4MacBook and not Ukelele? You might ask its developer directly if no answers come up. – user495470 Nov 18 '11 at 1:20

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